The conference program can be downloaded here.
The workshops take place at the Faculty of Physics.
| Satellite Workshops | |
| 13:15-17:15 HS1 |
Workshop 1 (Tim Beißbarth) Statistical Methods in Bioinformatics |
| 13:30-17:30 HS2 |
Workshop 2 (Peter Meinicke, Thomas Lingner) Computational Methods for Metagenomics and Meta-Omics |
| 10:00-16:00 HS3 |
Workshop 3 (Burkhard Morgenstern, Susana Vinga) Alignment-Free Sequence Comparison |
| 14:00-18:00 HS4 |
Workshop 4 (Edgar Wingender) Methods for Integrated Analysis of Multi-Level Datasets |
| 19:00-21:00 | Welcome Reception in old Town Hall (Markt 9, 37073 Göttingen) |
| Enjoy finger food and drinks |
|
| 19:30 | Prof. Dr. Ulrike Beisiegel, President of the University of Göttingen Welcome of the GCB 2013 participants |
| An opportunity to check in and to pick up the conference documents will be provided. |
The main conference takes place at the Faculty of Physics.
Talks will be held in lecture hall HS1, unless otherwise stated.
R … Regular Paper
H … Highlight Paper
| 8:00 | Registration opens, poster mounting | ||
| 9:00 | Opening (Burkhard Morgenstern, Program co-Chair) | ||
| Session Chair: Martin Kollmar | |||
| 9:05 | KEYNOTE
Gene expression genomics in T cells Sarah Teichmann (Wellcome Trust Sanger Institute, and European Bioinformatics Institute, Cambridge, UK) |
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| 9:50 | GEDEVO: An Evolutionary Graph Edit Distance Algorithm for Biological Network Alignment (R) Rashid Ibragimov, Maximilian Malek, Jiong Guo and Jan Baumbach |
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| 10:15 | PanCake: A Data Structure for Pangenomes (R) Corinna Ernst and Sven Rahmann |
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| 10:40 | Coffee break | ||
| Session Chair: Mario Stanke | |||
| 11:10 | Continuous rapid expansion of the mutually exclusive spliced exome in Drosophila species (H) Klas Hatje and Martin Kollmar |
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| 11:35 | Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment (R) Benedikt Löwes and Robert Giegerich |
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| 12:00 |
GenomeTools: a comprehensive software library for efficient processing of structured genome annotations (H) Gordon Gremme, Sascha Steinbiss and Stefan Kurtz |
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| 12:25 |
Aligning Flowgrams to DNA Sequences
(R) Marcel Martin and Sven Rahmann |
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| 12:50 | Lunch break | ||
| Session Chair: Kay Nieselt | |||
| 14:15 | KEYNOTE
Predicting the Past: Two recent applications of phylogenetic-network construction regarding the evolution of the HOX-gene cluster and the placental mammals Andreas Dress (Max-Planck-Institute for Mathematics in the Sciences, Leipzig, Germany) |
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| 15:00 | Poster Session
15:00-16:30 |
Even numbers |
15:00 GI board meeting (Room SR1, A1.101, 1st floor) |
| 16:15-16:45 Coffee Break | |||
| 16:30-18:00 | Odd numbers | 16:00 DECHEMA board meeting (Room SR1, A1.101, 1st floor) |
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Social event: Conference Dinner at the restaurant Bullerjahn starts at 19:00 (ticket required for entry)
| Session Chair: Martin Kollmar | ||
| 9:00 | KEYNOTE
Blind source separation applied to multiply labeled fluorescence images Erwin Neher (Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany) |
|
| 9:45 | Utilization of ordinal response structures in classification with high-dimensional expression data (R) Andreas Leha, Klaus Jung and Tim Beißbarth |
|
| 10:10 |
Versatile prioritization of candidate disease genes or other molecules with NetworkPrioritizer (H) Tim Kacprowski, Nadezhda T. Doncheva and Mario Albrecht |
|
| 10:35 | Coffee break | |
| Session Chair: Edgar Wingender | ||
| 11:00 | Exploiting structural information for target assessment (H) Andrea Volkamer and Matthias Rarey |
|
| 11:25 | Efficient Interpretation of Tandem Mass Tags in Top-Down Proteomics (R) Anna Katharina Hildebrandt, Ernst Althaus, Hans-Peter Lenhof, Chien-Wen Hung, Andreas Tholey and Andreas Hildebrandt |
|
| 11:50 |
On the estimation of metabolic profiles in metagenomics (R) Kathrin Petra Aßhauer and Peter Meinicke |
|
| 12:15 | Lunch break | |
| Session Chair: Ina Koch | ||
| 13:45 | KEYNOTE
Light-Based Systems Biology Eugene Myers (Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden, Germany) |
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| 14:30 | On Weighting Schemes for Gene Order Analysis (R) Matthias Bernt, Nicolas Wieseke and Martin Middendorf |
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| 14:55 | Alignment-free sequence comparison with spaced k-mers (R) Marcus Boden, Martin Schöneich, Sebastian Horwege, Sebastian Lindner, Chris Leimeister and Burkhard Morgenstern |
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| 15:20 | Dinucleotide distance histograms for fast detection of rRNA in metatranscriptomic sequences (R) Heiner Klingenberg, Robin Martinjak, Frank Oliver Glöckner, Rolf Daniel, Thomas Lingner and Peter Meinicke |
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| 15:45 | Coffee break | |
| 16:00 GBM board meeting (Room SR1, A1.101, 1st floor) |
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Social event: Guided walks through Göttingen's center start at 18:00 17:30 (ticket required for participation)
Program Committee Dinner at the Kartoffelhaus starts at 19:30 (by invitation only)
| Session Chair: Tim Beißbarth | |||
| 9:00 | KEYNOTE
Normalization of RNA-Seq Data: Are the ERCC Spike-In Controls Reliable? Terry Speed (Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia) |
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| 9:45 | Reconstructing Consensus Bayesian Network Structures with Application to Learning Molecular Interaction Networks (R) Holger Fröhlich and Gunnar W. Klau |
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| 10:10 |
Application of a Novel Triclustering Method (δ-TRIMAX) to Mine 3D Gene Expression Data of Breast Cancer Cells (H) Anirban Bhar, Martin Haubrock, Anirban Mukhopadhyay and Edgar Wingender |
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| 10:35 |
Paving the Way for Automated Clinical Breath Analysis and Biomarker Detection (H) Anne-Christin Hauschild, Jörg Ingo Baumbach and Jan Baumbach |
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| 11:00 | Coffee break | ||
| Session Chair: Thomas Lingner | |||
| 11:30 | TALEs of virulence and biotechnology (H) Jan Grau, Annett Wolf, Maik Reschke, Ulla Bonas, Stefan Posch and Jens Boch |
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| 11:55 | Learning Gene Network Structure from Time Laps Cell Imaging in RNAi Knock-Downs (H) Henrik Failmezger, Paurush Praveen, Achim Tresch and Holger Fröhlich |
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| 12:20 |
Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules (R) Ioana M. Lemnian, Ralf Eggeling and Ivo Grosse |
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| 12:45 | Closing Remarks, Award of Best Poster Prize (Tim Beißbarth) | ||
| 13:00 | The End | ||
Andreas Dress
External Scientific Member, Max-Planck-Institute for Mathematics in the Sciences, Leipzig, Germany
Predicting the Past: Two recent applications of phylogenetic-network construction regarding the evolution of the HOX-gene cluster and the placental mammals
Eugene Myers
Director and Klaus Tschira Chair of Systems Biology, Max-Planck-Institute of Molecular Cell Biology and Genetics, Dresden, Germany
Light-Based Systems Biology
Erwin Neher
Nobel laureate 1991, Max-Planck-Institute for Biophysical Chemistry, Göttingen, Germany
Blind source separation applied to multiply labeled fluorescence images
Terry Speed
Head of Bioinformatics division, Walter and Eliza Hall Institute of Medical Research, Melbourne, Australia
Normalization of RNA-Seq Data: Are the ERCC Spike-In Controls Reliable?
Sarah Teichmann
Group leader, Wellcome Trust Sanger Institute, and European Bioinformatics Institute, Cambridge, UK
Gene expression genomics in T cells